Introduction The Manhattan chart can display the values of regions on multiple chromosomes. You can use the plotManhattan of the
Introduction The bed format is a common format for describing genomic regions. The area can be visualized through the plotBed
Introduction The BEDPE format can concisely describe disjoint genome features, such as structural variations or paired end sequence alignments. The
Introduction The HiC interaction matrix is the interaction score between two positions on the genome. The HiC interaction graph can
Introduction The display of bedgraph can use the plotBedgraph function of Sushi package Code explanation Input bedGraph formatdata frame head(Sushi_DNaseI.bedgraph)
Introduction Sushi package can draw a variety of common genome formats, including bed, bedpe, bedgraph, Hic matrix, Manhattan map, gene
Introduction The expression of some prostate cancer-specific genes has nothing to do with mutations, so the author wanted to see
Introduction Through the line graph, the author showed that different types of prostate cancer have different methylation patterns. On ChrX,
Introduction When ggplot is making box plots or dot plots, it can actually check and add p-values, just use the
Bar graph of the relationship between the amount of DNA methylation valleys and H3K4me3 and H3K27me3
Introduction DNA methylation valleys (DNA methylation valleys, DMV) are a wide range of hypomethylated regions, which are related to the